STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2425long-chain-fatty-acid--CoA ligase FadD15. (400 aa)    
Predicted Functional Partners:
RN08_2424
long-chain-fatty-acid--CoA ligase FadD15.
     0.987
RN08_2799
Fatty acid synthase.
  
 0.957
RN08_3401
Long chain-fatty-acid--CoA ligase FadD13.
 
 
0.955
RN08_3620
Bifunctional protein acetyl-/propionyl-CoAcarboxylase subunit epsilon AccE.
     
  0.884
RN08_0596
3-oxoacyl-[acyl-carrier-protein] synthase III.
    
 0.814
RN08_3624
Bifunctional protein acetyl-/propionyl-CoA carboxylase subunit alpha AccA.
  
 
 0.813
RN08_0207
Lysophospholipase; Overlaps another CDS with the same product name.
    
 0.808
RN08_2495
acetyl-/propionyl-CoA carboxylase subunit beta.
    
 0.805
RN08_3412
Triacylglycerol lipase Lip.
  
 
  0.805
RN08_3619
propionyl-CoA carboxylase subunit beta.
    
 0.805
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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