STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2425long-chain-fatty-acid--CoA ligase FadD15. (400 aa)    
Predicted Functional Partners:
RN08_2424
long-chain-fatty-acid--CoA ligase FadD15.
     0.987
RN08_2799
Fatty acid synthase.
  
 0.964
RN08_0244
fatty-acid--CoA ligase FadD4.
 
 
0.955
RN08_1737
fatty-acid--CoA ligase FadD11.
  
  
 
0.917
RN08_3412
Triacylglycerol lipase Lip.
  
 
 0.810
RN08_2269
Polyketide synthase.
  
 0.731
RN08_1555
Guanylate kinase.
    
  0.699
RN08_0302
fatty-acid--CoA ligase FadD2; Overlaps another CDS with the same product name.
 
 
 0.696
RN08_3461
acyl-CoA dehydrogenase FadE23.
  
 0.685
RN08_3460
acyl-CoA dehydrogenase FadE24.
  
 0.671
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.