STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2448Transmembrane protein. (164 aa)    
Predicted Functional Partners:
RN08_2450
Nicotinate-nucleotide-dimethylbenzimidazol phosphoribosyltransferase.
       0.780
RN08_2451
Cobalamin synthase.
       0.780
RN08_2271
RNA polymerase-binding protein RbpA.
  
     0.736
RN08_2984
Hypothetical protein.
  
     0.735
RN08_2734
Aminopeptidase PepN; Overlaps another CDS with the same product name.
  
     0.713
RN08_1609
Protein-export membrane protein SecG.
  
     0.668
RN08_2439
Cytochrome c oxidase polypeptide 4.
 
     0.656
RN08_2035
HTH-type transcriptional regulator.
  
     0.648
RN08_2981
Hypothetical protein.
  
     0.647
RN08_2464
Transmembrane protein.
 
     0.631
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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