STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2499HTH-type transcriptional regulator. (189 aa)    
Predicted Functional Partners:
RN08_2498
Glycerol-3-phosphate dehydrogenase.
 
     0.916
RN08_2500
Flavoprotein.
 
     0.805
RN08_2501
Diacylglycerol kinase.
 
     0.762
RN08_2497
Glycerol-3-phosphate dehydrogenase.
       0.628
RN08_0372
Hypothetical protein.
   
    0.612
RN08_2502
Hypothetical protein.
       0.604
RN08_1514
HTH-type transcriptional regulator.
  
   
 0.470
RN08_0658
HTH-type transcriptional regulator Mce2R.
 
  
 0.446
RN08_3300
Hypothetical protein.
  
    0.436
RN08_0092
Transcriptional regulator; Overlaps another CDS with the same product name.
  
     0.417
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.