STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2504Transcriptional regulator. (72 aa)    
Predicted Functional Partners:
RN08_2503
Integral membrane protein.
     
 0.629
RN08_4263
Glutamate synthase large subunit.
     
 0.507
RN08_3297
3-isopropylmalate dehydratase large subunit.
    
 0.443
RN08_0242
Transcriptional regulator NadR.
   
  
 0.426
RN08_3296
3-isopropylmalate dehydratase small subunit.
    
 0.422
RN08_1916
Hypothetical protein.
   
    0.420
RN08_0473
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
    
  0.411
RN08_3080
tRNA pseudouridine synthase B.
    
  0.405
RN08_2900
Hypothetical protein.
   
    0.402
RN08_2903
Transcriptional regulator.
   
    0.402
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.