STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2540Haloalkane dehalogenase. (300 aa)    
Predicted Functional Partners:
RN08_2858
Haloalkane dehalogenase.
  
  
 
0.926
RN08_2037
Haloalkane dehalogenase.
  
  
 
0.925
RN08_0185
Zinc-type alcohol dehydrogenase subunit E.
   
  0.911
RN08_0850
Alcohol dehydrogenase B.
   
  0.911
RN08_2067
Alcohol dehydrogenase A.
    
  0.908
RN08_1717
Alcohol dehydrogenase; Overlaps another CDS with the same product name.
   
 
 0.906
RN08_4137
Cytidine/deoxycytidylate deaminase.
      0.833
RN08_2542
Hypothetical protein.
       0.725
RN08_3231
Phthiocerol synthesis polyketide synthase type I PpsC; Overlaps another CDS with the same product name.
  
 0.725
RN08_3233
Phthiocerol synthesis polyketide synthase type I PpsD.
  
 0.725
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.