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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2547Hypothetical protein. (80 aa)    
Predicted Functional Partners:
RN08_2546
Cutinase.
  
    0.586
RN08_2096
Membrane protein.
  
     0.537
RN08_1932
Hypothetical protein.
  
     0.535
RN08_2836
Hypothetical protein.
  
    0.534
RN08_3452
Two component sensor histidine kinase DevS.
  
 
 0.534
RN08_2246
Two component sensor histidine kinase DosT.
  
 
 0.527
RN08_0096
Hypothetical protein.
  
     0.525
RN08_2837
Hypothetical protein.
  
    0.512
RN08_2914
Hypothetical protein.
  
     0.469
RN08_3451
NAD(P)H nitroreductase.
  
     0.456
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.