STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2553Hypothetical protein. (273 aa)    
Predicted Functional Partners:
RN08_2968
Hypothetical protein.
  
 
  0.484
RN08_3656
Adenosine deaminase.
    
  0.473
RN08_3764
Inosine-5'-monophosphate dehydrogenase.
  
 
 0.445
RN08_1047
Bifunctional 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/cyclase/dehydrase.
    
  0.436
RN08_3302
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase.
    
  0.427
RN08_3529
NADH pyrophosphatase.
    
  0.422
RN08_1772
Histidinol dehydrogenase.
    
  0.407
RN08_0598
S-methyl-5'-thioadenosine phosphorylase.
    
  0.406
RN08_3648
Purine nucleoside phosphorylase.
    
  0.406
RN08_2048
Inosine-5'-monophosphate dehydrogenase.
    
  0.405
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.