STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2575Ornithine aminotransferase; Overlaps another CDS with the same product name. (221 aa)    
Predicted Functional Partners:
RN08_2574
Ornithine aminotransferase; Overlaps another CDS with the same product name.
    0.999
RN08_2576
Hypothetical protein.
 
 0.998
RN08_1331
Pyrroline-5-carboxylate dehydrogenase RocA.
 
 0.973
RN08_2573
Cationic amino acid transporter permease RocE.
  
 
 0.950
RN08_2706
Glutamate 5-kinase protein.
   
 0.930
RN08_2572
Universal stress protein.
  
  
 0.927
RN08_1835
Ornithine carbamoyltransferase.
 
 
 0.907
RN08_1831
N-acetyl-gamma-glutamyl-phosphate reductase.
  
 
 0.904
RN08_1833
Acetylglutamate kinase.
 
 
 0.900
RN08_1832
Bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase.
 
 
 0.899
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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