STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2629rRNA small subunit methyltransferase E. (262 aa)    
Predicted Functional Partners:
RN08_2630
Chaperone protein DnaJ; Overlaps another CDS with the same product name.
  
 
 0.883
RN08_2631
Chaperone protein DnaJ; Overlaps another CDS with the same product name.
  
 
 0.883
RN08_2632
Heat-inducible transcription repressor HrcA.
  
  
 0.817
RN08_3201
tRNA (guanine-N1)-methyltransferase.
  
  
 0.685
RN08_2404
rRNA small subunit methyltransferase H.
  
  
 0.680
RN08_3174
RNA methyltransferase.
   
  
 0.668
RN08_1573
Methyltransferase.
 
  
 0.646
RN08_2624
Endoribonuclease.
 
     0.589
RN08_0238
tRNA (guanine-N(7)-)-methyltransferase.
     
 0.555
RN08_2622
Cytidine deaminase.
       0.536
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.