STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2722MFS-type transporter. (418 aa)    
Predicted Functional Partners:
RN08_2723
ATP-dependent CLP protease ATP-binding subunit ClpX.
     
 0.831
RN08_3754
Hypothetical protein.
  
   
 0.709
RN08_2689
Hypothetical protein.
      
 0.657
RN08_2720
2-oxoglutarate oxidoreductase subunit KorB.
     
 0.620
RN08_2719
Molybdenum cofactor guanylyltransferase.
  
  
 0.557
RN08_2721
2-oxoglutarate oxidoreductase subunit KorA.
     
 0.545
RN08_2534
CDP-diacylglycerol pyrophosphatase.
  
    0.527
RN08_2724
Homocysteine S-methyltransferase MmuM.
  
    0.434
RN08_2930
Hypothetical protein.
  
     0.415
RN08_3419
Proline-rich protein.
  
 
 0.408
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.