STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2744NAD-dependent glutamate dehydrogenase. (1623 aa)    
Predicted Functional Partners:
RN08_4263
Glutamate synthase large subunit.
     
 0.997
RN08_2032
Glycogen accumulation regulator GarA.
    
 
 0.983
RN08_2466
Glutamine synthetase.
     
 0.972
RN08_3793
Glutamate decarboxylase GadB.
     
 0.967
RN08_2468
Glutamine synthetase.
     
 0.965
RN08_2084
Glutamine synthetase GlnA.
     
 0.963
RN08_3155
Glutamine synthetase.
     
 0.959
RN08_0284
Nitrite reductase large subunit NirB.
    
  0.950
RN08_2743
Hypothetical protein.
  
    0.948
RN08_4262
Glutamate synthase small subunit.
     
 0.942
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.