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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2862Bifunctional (p)ppGpp synthase/hydrolase RelA; Overlaps another CDS with the same product name. (139 aa)    
Predicted Functional Partners:
RN08_2863
Bifunctional (p)ppGpp synthase/hydrolase RelA; Overlaps another CDS with the same product name.
     0.994
RN08_3805
50S ribosomal protein L13.
   
 
 0.838
RN08_0062
30S ribosomal protein S6.
  
 
 0.827
RN08_1453
50S ribosomal protein L31.
  
 
 0.810
RN08_0761
30S ribosomal protein S12.
   
 
 0.795
RN08_0801
30S ribosomal protein S5.
   
 
 0.794
RN08_0784
50S ribosomal protein L2.
   
   0.792
RN08_3804
30S ribosomal protein S9.
   
 
 0.789
RN08_1819
50S ribosomal protein L20.
  
 
 0.786
RN08_0762
30S ribosomal protein S7.
   
 
 0.784
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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