Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2865Lipoprotein. (557 aa)    
Predicted Functional Partners:
RN08_1436
Oligopeptide ABC transporter permease OppB.
  
 0.964
RN08_1435
Oligopeptide ABC transporter permease OppC.
 
 0.941
RN08_4040
Dipeptide ABC transporter permease DppC.
  
 0.933
RN08_4041
Dipeptide ABC transporter permease DppB.
  
 0.922
RN08_2866
Protein translocase subunit SecF.
     
 0.872
RN08_2867
Protein translocase subunit SecD.
     
 0.871
RN08_1310
Monoacyl phosphatidylinositol tetramannoside-binding protein LpqW.
 
  
  0.843
RN08_1434
Oligopeptide ABC transporter ATP-binding protein OppD.
  
 0.815
RN08_4039
Dipeptide ABC transporter ATP-binding protein DppD.
  
 0.815
RN08_1427
Lipoprotein LprB.
 
   
 0.769
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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