STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2869Membrane protein secretion factor YajC. (115 aa)    
Predicted Functional Partners:
RN08_0713
Preprotein translocase SecE.
   
 
 0.992
RN08_1609
Protein-export membrane protein SecG.
  
 
 0.990
RN08_0813
Preprotein translocase SecY.
   
 
 0.984
RN08_3576
Protein translocase subunit SecA.
     
 0.980
RN08_2026
Protein translocase subunit SecA.
  
  
 0.978
RN08_2867
Protein translocase subunit SecD.
  
 
 0.977
RN08_4321
Membrane protein insertase YidC.
 
 
 0.969
RN08_3212
Signal recognition particle protein.
    
 0.968
RN08_3218
Signal recognition particle receptor FtsY.
    
 0.963
RN08_2870
4-aminobutyrate aminotransferase.
     
 0.948
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.