STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2884Transcriptional regulator. (251 aa)    
Predicted Functional Partners:
RN08_2885
Glutamine amidotransferase SnoP.
     
 0.848
RN08_2887
Pyridoxine biosynthesis protein.
     
 0.835
RN08_2886
acyl-CoA thioesterase TesB.
       0.753
RN08_1148
Hypothetical protein.
     
 0.671
RN08_0552
Hypothetical protein.
     
 0.667
RN08_1878
Inorganic polyphosphate/ATP-NAD kinase.
     
 0.659
RN08_2851
aspartate--tRNA ligase.
 
  
 0.649
RN08_1803
30S ribosomal protein S1.
 
  
 0.616
RN08_3199
50S ribosomal protein L19.
  
   0.616
RN08_4263
Glutamate synthase large subunit.
     
 0.600
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.