Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
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Co-expression
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[Homology]
Score
RN08_2895threonine--tRNA ligase. (692 aa)    
Predicted Functional Partners:
RN08_1826
phenylalanine--tRNA ligase subunit beta.
  
 
 0.946
RN08_0050
leucine--tRNA ligase.
 
 
 0.894
RN08_2891
Alpha-(1-2)-phosphatidylinositol mannosyltransferase.
 
   
 0.886
RN08_2894
AP-4-A phosphorylase.
     
 0.879
RN08_2893
CDP-diacylglycerol--inositol 3-phosphatidyltransferase.
     
 0.878
RN08_2892
Phosphatidylinositol mannoside acyltransferase.
     
 0.877
RN08_1127
methionine--tRNA ligase.
  
 
 0.870
RN08_2890
Membrane protein.
       0.864
RN08_2716
valine--tRNA ligase.
 
 
 0.863
RN08_1803
30S ribosomal protein S1.
 
 
 0.846
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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