STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2923Transmembrane protein DedA. (218 aa)    
Predicted Functional Partners:
RN08_2924
Hypothetical protein.
 
     0.609
RN08_2922
O-phosphotransferase.
       0.553
RN08_3471
NADH-quinone oxidoreductase subunit F.
    
 0.540
RN08_3475
NADH-quinone oxidoreductase subunit I.
    
 0.526
RN08_3466
NADH-quinone oxidoreductase subunit A.
    
 0.509
RN08_1878
Inorganic polyphosphate/ATP-NAD kinase.
    
  0.499
RN08_3476
NADH-quinone oxidoreductase subunit J.
    
  0.499
RN08_3477
NADH-quinone oxidoreductase subunit K.
    
  0.499
RN08_3478
NADH-quinone oxidoreductase subunit L.
    
  0.499
RN08_3479
NADH-quinone oxidoreductase subunit M.
    
  0.499
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.