STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_29671-deoxy-D-xylulose 5-phosphate synthase. (638 aa)    
Predicted Functional Partners:
RN08_3165
1-deoxy-D-xylulose 5-phosphate reductoisomerase.
 
 
 0.999
RN08_0468
Thiazole synthase.
     
 0.994
RN08_3960
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase.
 
  
 0.924
RN08_1246
4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
 
  
 0.905
RN08_3728
1-deoxy-D-xylulose 5-phosphate synthase; Overlaps another CDS with the same product name.
  
  
 
0.903
RN08_3729
4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
 
  
 0.899
RN08_3163
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase.
 
   
 0.898
RN08_3959
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
 
   
 0.888
RN08_1131
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase.
 
   
 0.818
RN08_2968
Hypothetical protein.
       0.629
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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