STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2971Antibiotic ABC transporter permease. (252 aa)    
Predicted Functional Partners:
RN08_2972
Antibiotic ABC transporter permease.
 
 
  0.999
RN08_2973
Antibiotic ABC transporter ATP-binding protein.
 
 
 0.997
RN08_2185
Hypothetical protein.
  
     0.772
RN08_3239
Multifunctional mycocerosic acid synthase; Overlaps another CDS with the same product name.
  
     0.753
RN08_0240
Hypothetical protein.
  
     0.741
RN08_4312
anti-sigma-M factor RsmA.
  
     0.734
RN08_1061
Integral membrane protein.
  
     0.694
RN08_1633
Antibiotic ABC transporter ATP-binding protein.
  
 
 0.683
RN08_0114
Oxidoreductase.
  
     0.663
RN08_1326
Acyltransferase PapA.
  
     0.649
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.