STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2972Antibiotic ABC transporter permease. (237 aa)    
Predicted Functional Partners:
RN08_2971
Antibiotic ABC transporter permease.
 
 
  0.999
RN08_2973
Antibiotic ABC transporter ATP-binding protein.
 
 
 0.996
RN08_1417
Hypothetical protein.
  
 
 0.810
RN08_3239
Multifunctional mycocerosic acid synthase; Overlaps another CDS with the same product name.
 
 
   0.786
RN08_2185
Hypothetical protein.
 
     0.772
RN08_2283
Integral membrane protein.
    
  0.757
RN08_4042
Dipeptide ABC transporter substrate-binding lipoprotein DppA.
    
  0.752
RN08_0240
Hypothetical protein.
  
     0.744
RN08_4312
anti-sigma-M factor RsmA.
  
     0.739
RN08_4145
Glycine betaine/carnitine/choline/L-proline ABC transporter substrate-binding lipoprotein ProX.
 
  
  0.721
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.