STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2995RNA polymerase sigma factor SigB. (323 aa)    
Predicted Functional Partners:
RN08_0744
DNA-directed RNA polymerase subunit beta.
 
 0.993
RN08_3818
DNA-directed RNA polymerase subunit alpha.
 
 0.989
RN08_0745
DNA-directed RNA polymerase subunit beta'.
 
 0.988
RN08_1556
DNA-directed RNA polymerase subunit omega.
   
 0.977
RN08_2271
RNA polymerase-binding protein RbpA.
    
 
 0.975
RN08_3961
RNA polymerase-binding transcription factor CarD.
   
 
 0.969
RN08_2996
Iron-dependent repressor and activator IdeR.
  
  
 0.903
RN08_3554
Transcriptional regulator WhiB1.
    
 
 0.830
RN08_2598
DNA primase.
 
  
 0.796
RN08_3524
Transcriptional regulator WhiB7.
    
 
 0.774
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.