Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RN08_3012tRNA delta(2)-isopentenylpyrophosphate transferase. (314 aa)    
Predicted Functional Partners:
RN08_3010
GTP-binding protein HflX.
 
  
 0.924
RN08_3018
(dimethylallyl)adenosine tRNA methylthiotransferase.
 
  
 0.921
RN08_3013
Alanine-rich protein.
       0.867
RN08_1826
phenylalanine--tRNA ligase subunit beta.
 
  
 0.864
RN08_3011
Diaminopimelate epimerase.
       0.830
RN08_0065
50S ribosomal protein L9.
 
 
 0.773
RN08_3795
Bifunctional ADP-dependent (S)-NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase.
 
  
 0.700
RN08_3218
Signal recognition particle receptor FtsY.
  
  
 0.699
RN08_2404
rRNA small subunit methyltransferase H.
 
 
 0.685
RN08_1348
Hypothetical protein.
     
 0.673
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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