STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3018(dimethylallyl)adenosine tRNA methylthiotransferase. (512 aa)    
Predicted Functional Partners:
RN08_3012
tRNA delta(2)-isopentenylpyrophosphate transferase.
 
  
 0.940
RN08_3017
Transmembrane protein.
       0.874
RN08_3174
RNA methyltransferase.
 
  
 0.789
RN08_1348
Hypothetical protein.
     
 0.722
RN08_1573
Methyltransferase.
  
  
 0.712
RN08_3070
Bifunctional guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase.
 
  
 0.684
RN08_1373
Mrp-like protein.
  
  
 0.639
RN08_3011
Diaminopimelate epimerase.
 
   
 0.636
RN08_1499
Ribonuclease PH.
  
   0.575
RN08_2963
Uroporphyrinogen decarboxylase.
  
 
 0.575
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.