STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3034DNA translocase FtsK. (767 aa)    
Predicted Functional Partners:
RN08_4317
Chromosome partitioning protein ParB.
 
  
 0.876
RN08_2386
Cell division protein FtsQ.
  
 0.863
RN08_2402
Penicillin-binding membrane protein PbpB.
 
 0.847
RN08_2385
Cell division protein FtsZ.
  
 0.816
RN08_2389
Lipid II flippase FtsW.
 
 
 0.796
RN08_3807
ESAT-6 like protein EsxU.
   
 
 0.794
RN08_3806
ESAT-6 like protein EsxT.
   
 
 0.746
RN08_1884
Tyrosine recombinase XerD.
 
   
 0.716
RN08_2932
Integrase.
 
   
 0.716
RN08_0001
Chromosomal replication initiator protein DnaA.
  
  
 0.707
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.