STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3045Antitoxin VapB42. (89 aa)    
Predicted Functional Partners:
RN08_3044
Ribonuclease VapC42.
  
 
 0.979
RN08_3046
Type I restriction/modification system specificity determinant HsdS.
       0.803
RN08_3047
Hypothetical protein.
       0.799
RN08_3042
Ribonuclease VapC21.
     
 0.759
RN08_3043
Antitoxin VapB21.
       0.750
RN08_0307
Transcriptional regulator.
   
    0.718
RN08_3674
ECF RNA polymerase sigma factor SigJ.
   
    0.715
RN08_3846
Hypothetical protein.
   
    0.714
RN08_1863
Molybdopterin biosynthesis protein MoeX.
   
    0.667
RN08_3486
Methanol dehydrogenase transcriptional regulator MoxR.
   
    0.656
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.