STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3047Hypothetical protein. (139 aa)    
Predicted Functional Partners:
RN08_3046
Type I restriction/modification system specificity determinant HsdS.
  
    0.949
RN08_3042
Ribonuclease VapC21.
     
 0.895
RN08_3048
Dihydrofolate reductase.
  
  
 0.855
RN08_3044
Ribonuclease VapC42.
       0.799
RN08_3045
Antitoxin VapB42.
       0.799
RN08_3049
Thymidylate synthase ThyA.
     
 0.767
RN08_3041
Type I restriction/modification system DNA methylase HsdM.
       0.725
RN08_3043
Antitoxin VapB21.
       0.707
RN08_3050
Alanine-rich hydrolase.
       0.670
RN08_3038
Ribonuclease J.
     
 0.577
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.