STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3053PPE family protein PPE43. (394 aa)    
Predicted Functional Partners:
RN08_3052
Membrane protein.
  
  
 0.853
RN08_1169
PE family protein PE27.
   
 
0.835
RN08_1994
Hypothetical protein.
    
 
 0.801
RN08_2870
4-aminobutyrate aminotransferase.
      
 0.792
RN08_3054
PE family protein PE27.
     
0.763
RN08_2869
Membrane protein secretion factor YajC.
      
 0.624
RN08_3051
Short-chain type dehydrogenase/reductase.
       0.475
RN08_3835
PE family protein PE31.
      
 0.414
RN08_4167
Aminotransferase.
      
 0.410
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.