STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3066L-alanine dehydrogenase; Overlaps another CDS with the same product name. (132 aa)    
Predicted Functional Partners:
RN08_3067
L-alanine dehydrogenase; Overlaps another CDS with the same product name.
     0.994
RN08_3776
Alanine racemase.
  
  
 0.738
RN08_3065
Lrp/AsnC family transcriptional regulator.
     
 0.730
RN08_4263
Glutamate synthase large subunit.
      
 0.616
RN08_1878
Inorganic polyphosphate/ATP-NAD kinase.
    
 0.530
RN08_0177
NAD(P) transhydrogenase subunit alpha PntAa.
 
  
 
0.516
RN08_0179
NAD(P) transhydrogenase subunit beta PntB.
    
  0.499
RN08_3064
Hypothetical protein.
       0.476
RN08_0178
NAD(P) transhydrogenase subunit alpha PntAb.
    
  0.429
RN08_2036
Glycine dehydrogenase.
     
 0.412
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.