Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3074Alanine-rich protein. (587 aa)    
Predicted Functional Partners:
RN08_3075
Transcriptional repressor SirR.
       0.564
RN08_4067
Membrane protein.
  
  
  0.512
RN08_0399
PPE family protein PPE8.
  
     0.503
RN08_4068
Hypothetical protein.
  
  
  0.496
RN08_2452
Integral membrane protein.
  
     0.494
RN08_3696
PPE family protein PPE56; Overlaps another CDS with the same product name.
  
     0.476
RN08_3073
Bifunctional riboflavin kinase /FMN adenylyltransferase.
       0.470
RN08_2299
Hypothetical protein.
 
    0.466
RN08_3109
CRISPR type III-associated RAMP protein Csm5.
  
     0.465
RN08_3625
RNA polymerase sigma factor SigF.
  
  
 0.450
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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