STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3109CRISPR type III-associated RAMP protein Csm5. (375 aa)    
Predicted Functional Partners:
RN08_3110
CRISPR type III-associated RAMP protein Csm4.
 
 0.999
RN08_3111
CRISPR type III-associated RAMP protein Csm3.
 
 
 0.999
RN08_3112
CRISPR type III-associated protein Csm2.
 
 
 0.999
RN08_3113
CRISPR-associated protein Cas10/Csm1.
 
 
 0.997
RN08_3108
CRISPR-associated protein Csm6.
  
  
 0.976
RN08_3115
CRISPR-associated endoribonuclease Cas6.
 
   
 0.903
RN08_3106
CRISPR-associated endoribonuclease Cas2.
 
   
 0.897
RN08_0346
PPE family protein PPE5.
  
   
 0.778
RN08_0347
PPE family protein PPE5.
  
   
 0.778
RN08_3692
PPE family protein PPE54.
  
   
 0.776
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.