Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3133Ribosome maturation factor RimP. (183 aa)    
Predicted Functional Partners:
RN08_3132
Transcription termination/antitermination protein NusA.
  
  
 0.985
RN08_0761
30S ribosomal protein S12.
   
 
 0.958
RN08_3204
30S ribosomal protein S16.
   
 
 0.929
RN08_0062
30S ribosomal protein S6.
  
 
 0.923
RN08_0762
30S ribosomal protein S7.
   
 
 0.915
RN08_0787
30S ribosomal protein S3.
   
 
 0.910
RN08_3819
30S ribosomal protein S4.
  
 
 0.906
RN08_3804
30S ribosomal protein S9.
   
 
 0.905
RN08_0790
30S ribosomal protein S17.
   
 
 0.902
RN08_3072
30S ribosomal protein S15.
  
 
 0.900
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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