Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RN08_3136proline--tRNA ligase. (626 aa)    
Predicted Functional Partners:
RN08_1724
isoleucine--tRNA ligase.
   
 0.986
RN08_1446
arginine--tRNA ligase.
  
 0.981
RN08_0050
leucine--tRNA ligase.
  
 0.978
RN08_3301
glutamate--tRNA ligase.
  
 0.974
RN08_1127
methionine--tRNA ligase.
  
 0.973
RN08_1816
Bifunctional lysine--tRNA ligase/phosphatidylglycerol lysyltransferase.
  
 0.937
RN08_3978
lysine--tRNA ligase.
  
 0.933
RN08_1826
phenylalanine--tRNA ligase subunit beta.
  
 
 0.902
RN08_3747
GMP synthase.
  
  
 0.842
RN08_3137
MFS-type transporter EfpA.
       0.821
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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