Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RN08_3159Penicillin-binding lipoprotein. (603 aa)    
Predicted Functional Partners:
RN08_2389
Lipid II flippase FtsW.
 
 0.923
RN08_4059
Bifunctional penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase.
 
 
 0.902
RN08_0022
Cell division protein RodA.
 
 0.888
RN08_2386
Cell division protein FtsQ.
 
 
 0.871
RN08_0059
Bifunctional penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase.
 
 
 0.846
RN08_4000
Hypothetical protein.
  
  
 0.770
RN08_3676
Penicillin-binding protein DacB.
  
 
 0.704
RN08_2319
Membrane protein.
  
   
 0.676
RN08_1145
Membrane protein.
  
 
 0.661
RN08_4315
Peptidoglycan hydrolase.
  
 
 0.641
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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