Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3166Ribonuclease VapC43. (147 aa)    
Predicted Functional Partners:
RN08_1563
Ribonuclease VapC10.
  
   
 0.679
RN08_0667
Ribonuclease VapC4.
  
   
 0.665
RN08_2825
Ribonuclease VapC19.
  
   
 0.659
RN08_0834
Antitoxin VapB31.
   
 
 0.637
RN08_3167
Cell surface lipoprotein.
       0.600
RN08_2333
Antitoxin VapB37.
  
    0.554
RN08_2827
Ribonuclease VapC20.
  
   
 0.543
RN08_1911
Ribonuclease VapC12.
  
     0.532
RN08_3761
Ribonuclease VapC47.
  
   
 0.503
RN08_0699
Antitoxin VapB5.
 
    0.479
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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