STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3181HTH-type transcriptional regulator. (139 aa)    
Predicted Functional Partners:
RN08_1570
Transcriptional regulator.
      
 0.657
RN08_0978
HTH-type transcriptional regulator.
   
  
 0.544
RN08_2580
Hypothetical protein.
  
  
 0.513
RN08_1053
Glucose-6-phosphate isomerase.
  
  
 0.468
RN08_1439
Bifunctional sulfate adenyltransferase subunit 1 CysN/adenylylsulfate kinase CysC.
     
 0.440
RN08_2251
NAD(P)H nitroreductase acg.
 
 
  0.427
RN08_3444
Hypothetical protein.
 
 
  0.421
RN08_3073
Bifunctional riboflavin kinase /FMN adenylyltransferase.
     
 0.405
RN08_3179
Transposase.
       0.405
RN08_3180
Resolvase.
       0.405
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.