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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3192Hypothetical protein. (503 aa)    
Predicted Functional Partners:
RN08_3191
Hypothetical protein.
 
 0.971
RN08_3193
Hypothetical protein.
 
  
 0.959
RN08_3190
Mycobactin utilization protein ViuB.
       0.829
RN08_3194
FdhD protein.
       0.721
RN08_2676
Hypothetical protein.
 
  
 0.716
RN08_2875
Crossover junction endodeoxyribonuclease RuvC.
 
   
 0.692
RN08_3038
Ribonuclease J.
     
 0.677
RN08_3189
Tyrosine recombinase XerC.
     
 0.671
RN08_3174
RNA methyltransferase.
     
 0.668
RN08_3195
Formate dehydrogenase subunit alpha FdhF.
       0.550
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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