STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3195Formate dehydrogenase subunit alpha FdhF. (779 aa)    
Predicted Functional Partners:
RN08_3194
FdhD protein.
 
 
 0.991
RN08_4263
Glutamate synthase large subunit.
  
 0.882
RN08_2433
Ubiquinol-cytochrome C reductase cytochrome subunit C.
  
 0.775
RN08_0764
Elongation factor Tu.
   
 
 0.768
RN08_1306
Nitrate reductase subunit beta.
   
 0.734
RN08_3475
NADH-quinone oxidoreductase subunit I.
  
 
 0.707
RN08_0103
Formate hydrogenase HycE.
    
 0.700
RN08_2434
Ubiquinol-cytochrome C reductase rieske iron-sulfur subunit; Overlaps another CDS with the same product name.
  
 0.680
RN08_2435
Ubiquinol-cytochrome C reductase rieske iron-sulfur subunit; Overlaps another CDS with the same product name.
  
 0.680
RN08_2321
Sec-independent protein translocase transmembrane protein TatC.
   
 0.679
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.