close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3198Signal peptidase. (294 aa)    
Predicted Functional Partners:
RN08_3197
Ribonuclease HII.
 
  
 0.949
RN08_3199
50S ribosomal protein L19.
  
    0.834
RN08_2667
GTP-binding protein LepA.
  
 
 0.827
RN08_1461
ATP synthase subunit C.
    
 0.799
RN08_2804
Hypothetical protein.
   
 
 0.758
RN08_1046
Multifunctional non-homologous end joining DNA repair protein/ATP dependent DNA ligase LigD.
    
 0.751
RN08_3373
DNA ligase.
    
 0.744
RN08_4115
DNA ligase C.
    
 0.744
RN08_3196
Hypothetical protein.
       0.739
RN08_0802
50S ribosomal protein L30.
  
 
 0.712
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.