STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3203Hypothetical protein. (80 aa)    
Predicted Functional Partners:
RN08_3204
30S ribosomal protein S16.
  
  
 0.987
RN08_4320
Hypothetical protein.
  
 
 0.962
RN08_3202
16S rRNA processing protein RimM.
  
  
 0.907
RN08_3199
50S ribosomal protein L19.
  
  
 0.869
RN08_3819
30S ribosomal protein S4.
  
    0.844
RN08_3072
30S ribosomal protein S15.
  
    0.840
RN08_1819
50S ribosomal protein L20.
  
    0.812
RN08_3804
30S ribosomal protein S9.
  
    0.808
RN08_1453
50S ribosomal protein L31.
   
    0.778
RN08_1092
50S ribosomal protein L32.
  
    0.763
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.