STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3208D-amino acid aminohydrolase. (598 aa)    
Predicted Functional Partners:
RN08_3207
TetR family HTH-type transcriptional regulator.
 
  
 0.933
RN08_0335
Hypothetical protein.
  
     0.570
RN08_4163
Lipase LipE.
 
     0.552
RN08_3209
Serine/threonine-protein kinase PknI.
     
 0.536
RN08_1096
Serine protease PepD.
      
 0.511
RN08_1544
Aspartate carbamoyltransferase.
    
  0.503
RN08_1678
Esterase LipL.
 
     0.490
RN08_2136
Lipase LipD.
 
     0.465
RN08_2372
Dihydroorotate dehydrogenase.
    
  0.460
RN08_2373
Dihydroorotate dehydrogenase.
    
  0.460
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.