Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3276Integral membrane protein. (195 aa)    
Predicted Functional Partners:
RN08_3277
Hypothetical protein.
 
  
 0.952
RN08_3275
Pyruvate carboxylase.
       0.723
RN08_3278
Lipase/esterase LipN.
       0.698
RN08_3273
Methyltransferase.
       0.584
RN08_0588
Thioredoxin.
   
 
 0.541
RN08_0589
Cytochrome C-type biogenesis protein CcdA.
     
 0.529
RN08_2141
Immunogenic protein Mpt63.
      
 0.511
RN08_3173
Soluble secreted antigen Mpt53.
      
 0.509
RN08_3274
Pyruvate carboxylase.
       0.468
RN08_2276
Transmembrane protein FxsA.
  
   
 0.447
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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