Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RN08_3293Polyphosphate kinase. (742 aa)    
Predicted Functional Partners:
RN08_3569
Polyphosphate kinase.
 
  
 0.983
RN08_0552
Hypothetical protein.
 
 
 0.939
RN08_4001
Inorganic pyrophosphatase.
    
 0.927
RN08_1148
Hypothetical protein.
 
 
 0.911
RN08_0915
Mycothiol acetyltransferase.
      0.815
RN08_3294
8-oxo-dGTP diphosphatase.
 
   
 0.799
RN08_3292
2-phospho-L-lactate guanylyltransferase.
       0.748
RN08_0005
DNA gyrase subunit B.
     
 0.672
RN08_0744
DNA-directed RNA polymerase subunit beta.
      
 0.589
RN08_3129
Bifunctional oligoribonuclease/PAP phosphatase NrnA.
     
  0.531
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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