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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_32948-oxo-dGTP diphosphatase. (317 aa)    
Predicted Functional Partners:
RN08_3293
Polyphosphate kinase.
 
   
 0.819
RN08_0786
50S ribosomal protein L22.
     
 0.757
RN08_2226
Hypothetical protein.
  
  
 0.674
RN08_0242
Transcriptional regulator NadR.
    
 0.664
RN08_1304
8-oxo-dGTP diphosphatase.
  
 0.658
RN08_2704
Glutamine-dependent NAD(+) synthetase.
  
 
 0.638
RN08_1826
phenylalanine--tRNA ligase subunit beta.
 
   
 0.634
RN08_2036
Glycine dehydrogenase.
    
  0.629
RN08_2451
Cobalamin synthase.
  
 
 0.621
RN08_3292
2-phospho-L-lactate guanylyltransferase.
       0.611
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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