STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3356NADP-dependent alcohol dehydrogenase. (346 aa)    
Predicted Functional Partners:
RN08_0168
Aldehyde dehydrogenase.
  
 
 0.963
RN08_0253
Aldehyde dehydrogenase.
  
 
 0.963
RN08_0511
Aldehyde dehydrogenase.
  
 
 0.956
RN08_0857
Aldehyde dehydrogenase AldA.
  
 
 0.952
RN08_3633
Piperideine-6-carboxylic acid dehydrogenase.
  
 
 0.952
RN08_4074
Glycerol kinase.
    
 0.917
RN08_1875
Phosphatase.
     
  0.900
RN08_2269
Polyketide synthase.
  
 0.688
RN08_1748
Threonine dehydratase IlvA.
  
 0.652
RN08_3355
FeIII-dicitrate-binding periplasmic lipoprotein.
     
 0.650
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.