Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3404Alanine/valine-rich protein. (259 aa)    
Predicted Functional Partners:
RN08_3989
Zinc metalloprotease FtsH.
  
 0.886
RN08_3403
Hypothetical protein.
       0.773
RN08_3069
Zinc protease.
  
 0.741
RN08_2269
Polyketide synthase.
  
 
 0.592
RN08_1666
Hypothetical protein.
  
 
 0.584
RN08_4321
Membrane protein insertase YidC.
  
 
 0.579
RN08_2440
Cytochrome C oxidase subunit II.
   
 
 0.563
RN08_3402
Hypothetical protein.
   
   0.553
RN08_0128
Integral membrane protein.
   
 0.551
RN08_1496
Integral membrane protein.
   
 0.551
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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