Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3407Oxidoreductase. (334 aa)    
Predicted Functional Partners:
RN08_3408
Hypothetical protein.
  
 
 0.955
RN08_3409
Hypothetical protein.
  
 
 0.955
RN08_3410
HTH-type transcriptional regulator.
 
  
 0.891
RN08_3597
Coenzyme F420:L-glutamate ligase.
 
 
 0.831
RN08_3596
2-phospho-L-lactate transferase.
 
   
 0.768
RN08_3188
Oxidoreductase.
  
     0.738
RN08_2398
Hypothetical protein.
  
     0.733
RN08_3253
Phthiodiolone/phenolphthiodiolone dimycocerosates ketoreductase.
  
     0.731
RN08_3923
Deazaflavin-dependent nitroreductase.
  
   
 0.716
RN08_3406
Integral membrane protein.
       0.706
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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