STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3499Amidase. (269 aa)    
Predicted Functional Partners:
RN08_3498
Amidase.
     0.955
RN08_3321
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B.
  
 0.914
RN08_3324
glutamyl-tRNA(GLN) amidotransferase subunit C.
  
 0.905
RN08_3220
Acylphosphatase.
    
  0.903
RN08_3927
CoA-transferase subunit alpha.
     
  0.900
RN08_3497
Short-chain dehydrogenase/reductase.
  
    0.869
RN08_4263
Glutamate synthase large subunit.
    
 0.816
RN08_3301
glutamate--tRNA ligase.
  
 0.796
RN08_2851
aspartate--tRNA ligase.
  
 0.761
RN08_3747
GMP synthase.
  
 
 0.759
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.