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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3530Transmembrane cation transporter. (355 aa)    
Predicted Functional Partners:
RN08_3531
ATP-dependent DNA helicase; Overlaps another CDS with the same product name.
  
  
 0.805
RN08_3532
ATP-dependent DNA helicase; Overlaps another CDS with the same product name.
  
  
 0.805
RN08_3529
NADH pyrophosphatase.
       0.798
RN08_1573
Methyltransferase.
  
   0.657
RN08_0572
uroporphyrin-III C-methyltransferase; Overlaps another CDS with the same product name.
 
    0.537
RN08_0712
(3R)-hydroxyacyl-ACP dehydratase subunit HadC.
   
  
 0.536
RN08_1054
Chorismate mutase.
 
     0.529
RN08_3535
DNA-methyltransferase.
  
    0.526
RN08_3534
Lipase LipV.
     
 0.518
RN08_1951
GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol dimannoside mannosyltransferase.
  
 
 0.504
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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