STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3532ATP-dependent DNA helicase; Overlaps another CDS with the same product name. (1055 aa)    
Predicted Functional Partners:
RN08_3531
ATP-dependent DNA helicase; Overlaps another CDS with the same product name.
 
 
 
0.998
RN08_3526
ATP-dependent DNA helicase UvrD.
 
 0.991
RN08_3527
ATP-dependent DNA helicase UvrD.
 
 0.986
RN08_2430
Hypothetical protein.
  
 
 0.912
RN08_0067
Replicative DNA helicase.
 
 0.907
RN08_2874
Holliday junction ATP-dependent DNA helicase RuvA.
  
 
 0.899
RN08_3529
NADH pyrophosphatase.
 
     0.827
RN08_1055
ATP-dependent DNA helicase UvrD.
 
 
 
0.817
RN08_3530
Transmembrane cation transporter.
  
  
 0.805
RN08_1802
DNA polymerase I.
   
 
 0.798
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.