STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_3545ATP-dependent RNA helicase RhlE. (559 aa)    
Predicted Functional Partners:
RN08_3070
Bifunctional guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase.
  
 0.957
RN08_3795
Bifunctional ADP-dependent (S)-NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase.
  
 0.949
RN08_3819
30S ribosomal protein S4.
  
 0.919
RN08_0782
50S ribosomal protein L4.
  
 0.916
RN08_1573
Methyltransferase.
 
 0.913
RN08_0013
Iron-regulated peptidyl-prolyl cis-trans isomerase PpiA.
 
 0.912
RN08_2861
Peptidyl-prolyl cis-trans isomerase B.
 
 0.906
RN08_1499
Ribonuclease PH.
   
 0.903
RN08_0726
50S ribosomal protein L10.
  
 0.902
RN08_0139
Elongation factor G.
  
 0.898
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.